source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[cell line]	characteristics[developmental stage]	characteristics[disease]	characteristics[treatment]	characteristics[ancestry category]	characteristics[sex]	characteristics[age]	characteristics[biological replicate]	characteristics[material type]	assay name	technology type	comment[proteomics data acquisition method]	comment[data file]	comment[file uri]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[sdrf version]	comment[sdrf template]	factor value[treatment]
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 1	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA380.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA380.raw	1	1	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 2	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA381.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA381.raw	1	2	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 3	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA382.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA382.raw	1	3	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 4	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA383.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA383.raw	1	4	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 5	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA384.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA384.raw	1	5	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 6	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA385.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA385.raw	1	6	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 7	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA386.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA386.raw	1	7	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 8	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA387.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA387.raw	1	8	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 9	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA388.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA388.raw	1	9	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 10	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA389.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA389.raw	1	10	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 11	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA390.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA390.raw	1	11	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 1	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT126	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 2	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT127N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 3	Homo sapiens	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	not available	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT127C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	not applicable
Sample 4	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT128N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 5	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT128C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 6	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT129N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 7	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siControl	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT129C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siControl
Sample 8	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT130N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 9	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT130C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 10	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT131N	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1
Sample 11	Homo sapiens	lung	epithelial cell	A549	adult	Non-small cell lung carcinoma	siKMT9#1	Caucasian	male	58Y	1	cell	run 12	proteomic profiling by mass spectrometry	NT=Data-dependent acquisition;AC=PRIDE:0000627	MFA391.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD014145/MFA391.raw	1	12	TMT131C	NT=Q Exactive Plus;AC=MS:1001911	AC=MS:1001313;NT=Trypsin/P	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=TMT6plex;AC=UNIMOD:737;TA=K;MT=Variable	NT=TMT6plex;AC=UNIMOD:737;PP=Any N-term;MT=Variable	NT=Oxidation;AC=UNIMOD:35;MT=Variable;TA=M	NT=Acetyl;AC=UNIMOD:1;PP=Protein N-term;MT=variable	4.5 ppm	20 ppm	v1.1.0	NT=ms-proteomics;VV=v1.1.0	siKMT9#1