TOF Grid-Profile

Provenance. QTOF runs acquired in SWATH/DIA (grid/window) mode, the 2-D m/z × scan structure the grid encoding targets. SCIEX TripleTOF 6600 SWATH from PRIDE (PXD071869 · PXD011326) and MassIVE (MSV000090684 · MSV000090136 · MSV000093587); a Bruker microTOF-Q BAF run (PXD059108); and two Agilent QTOF deposits (PXD059765 · PXD041903) that are centroid-only at source and so carry RAW without a profile conversion. Each dataset names its accession; all are openly licensed public deposits.

Size vs vendor RAW (=100%) across 5 dataset(s) > 50 MB · bars = mean, dots = runs.

MSV000090684SCIEX TripleTOF 6600 — SWATH/DIA BioID proximity-labelling map of nuclear bodies in human cells (Dyakov et al. 2023); one run of a 334-sample deposit. 1.1 GB .wiff → 0.74 GB mzPeak (66%). Filename records the instrument (TOF6600). MassIVE MSV000090684.3 files
raw 1.0 GB, mzML n.a., mzPeak 707.4 MB (66%/n.a.)

mzpeak9611_NSMF_CBF_BR1_BioID_20180119_TOF6600_AS13_SWATH.mzpeak▶ View707.4 MB
raw9611_NSMF_CBF_BR1_BioID_20180119_TOF6600_AS13_SWATH.wiff5.6 MB
scan9611_NSMF_CBF_BR1_BioID_20180119_TOF6600_AS13_SWATH.wiff.scan1.0 GB

MSV000093587SCIEX QTOF (model not stated in the deposit) — SWATH/DIA lung proteome of CD-1 mouse offspring after developmental PFAS exposure (PFOS/PFOA/PFHxS mixture). 1.1 GB .wiff → 0.75 GB mzPeak (68%). MassIVE MSV000093587.3 files
raw 1.0 GB, mzML n.a., mzPeak 723.4 MB (68%/n.a.)

MSV000095995SCIEX ZenoTOF 7600 — top-down proteomics platform with electron-activated dissociation (EAD), reduced RNase B measured in MRM-HR. 0.08 GB .wiff+.wiff.scan+.wiff2 → 0.05 GB mzPeak (65%); the native SCIEX reader recovers the uniform-m/z flight-time grid. MassIVE MSV000095995.4 files
raw 73.4 MB, mzML n.a., mzPeak 48.2 MB (66%/n.a.)

mzpeak20240826_RNAseB_Reduced_50ngul_1ul_MRM_03.mzpeak▶ View48.2 MB
raw20240826_RNAseB_Reduced_50ngul_1ul_MRM_03.wiff2.1 MB
scan20240826_RNAseB_Reduced_50ngul_1ul_MRM_03.wiff.scan69.0 MB
wiff220240826_RNAseB_Reduced_50ngul_1ul_MRM_03.wiff22.4 MB

PXD011326SCIEX TripleTOF 6600 — SWATH/DIA proteomics of an iPSC model of early-onset Parkinson's disease (Homo sapiens). 1.75 GB .wiff+.wiff.scan → 1.09 GB mzPeak (62%). Filename records the instrument (SWATH_6600). PRIDE PXD011326.3 files
raw 1.6 GB, mzML n.a., mzPeak 1.0 GB (62%/n.a.)

mzpeakVD_170826_SWATH_6600_PD_01.mzpeak▶ View1.0 GB
rawVD_170826_SWATH_6600_PD_01.wiff12.5 MB
scanVD_170826_SWATH_6600_PD_01.wiff.scan1.6 GB

PXD071869SCIEX ZenoTOF 7600 — SWATH/DIA benchmarking of biomanufacturing pipelines in Halomonas bluephagenesis and E. coli; the study compares five DIA platforms and this is its SCIEX arm. 2.41 GB .wiff+.wiff.scan+.wiff2 → 1.95 GB mzPeak (81%). PRIDE PXD071869.4 files
raw 2.2 GB, mzML n.a., mzPeak 1.8 GB (81%/n.a.)

📏 TOF Grid-Profile5 datasets · 10.3 GB