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🧬 Study Design Embedding5 datasets · 3.6 GB

Data on a study's experimental design can be integrated, e.g., from an SDRF file.

Provenance. HUPO-PSI / bigbio community-curated SDRF annotations over PRIDE (PXD009465 · PXD011799 · PXD014145 · PXD020187) and MetaboLights (MTBLS1129) studies — label-free plus TMT 6/10/11-plex isobaric designs. Each dataset holds one run's mzML, its mzPeak (carrying the study SDRF verbatim as sample_metadata/sdrf.tsv) and the SDRF table; the study's other runs and its vendor RAW stay at the named accession.

MTBLS1129MetaboLights MTBLS1129 · label-free metabolomics (Waters Xevo G2-XS; Cai et al. 2020) — clean SDRF↔mzML pair.3 files
Raw n.a., mzML 80.4 MB, mzPeak 36.4 MB (n.a./45%)
PXD009465PRIDE PXD009465 · TMT 6-plex Plasmodium falciparum PfPK7 phosphoproteome (LTQ Orbitrap Velos; Pease et al. 2018).3 files
Raw n.a., mzML 159.6 MB, mzPeak 43.4 MB (n.a./27%)
PXD011799PRIDE PXD011799 · TMT 10-plex melanoma B cells (Orbitrap Fusion Lumos; Griss et al. 2019) — the TMT channel-model fixture.3 files
Raw n.a., mzML 270.0 MB, mzPeak 80.9 MB (n.a./30%)
PXD014145PRIDE PXD014145 · TMT 11-plex KMT9 lung cancer (Q Exactive; Baumert et al. 2020).3 files
Raw n.a., mzML 1.2 GB, mzPeak 295.6 MB (n.a./24%)
PXD020187PRIDE PXD020187 · label-free decellularized umbilical artery (LTQ Orbitrap Elite; Mallis et al. 2020).3 files
Raw n.a., mzML 1.2 GB, mzPeak 289.3 MB (n.a./23%)